Ontology
comment: HOZO:OWL Export(build-20120726)

RelationalConcept
type: Class

hasPart
type: ObjectProperty

hasAttribute
type: ObjectProperty

depends_on
type: ObjectProperty

YAMATO_Any
type: Class
comment: The root class.

YAMATO_universal
type: Class
comment: This mean concepts which appear in our domain of discourse such as Concept, Instance, State, etc. This is not seriously elaborated yet.
subclass of: YAMATO_Any

YAMATO_particular
type: Class
comment: Ordinary top-most type.
subclass of: YAMATO_Any

YAMATO_substrate
type: Class
comment: This needs further elaboration. Anyway, this is what entities need to exist in the real world.
subclass of: YAMATO_particular

YAMATO_entity
type: Class
comment: Something which exists independently of others. Entity requires time, space and substance to exist.
subclass of: YAMATO_particular
subclass of: Restriction
  min cardinality: 1
  on property: has quality type
subclass of: Restriction
  on property: has quality type
  all values from: YAMATO_quality_1
subclass of: Restriction
  min cardinality: 1
  on property: has quality value
subclass of: Restriction
  on property: has quality value
  all values from: YAMATO_quality_value
subclass of: Restriction
  min cardinality: 1
  on property: has quality quantity
subclass of: Restriction
  on property: has quality quantity
  all values from: YAMATO_specifically_dependent
subclass of: Restriction
  cardinality: 1
  on property: has condition

YAMATO_specifically_dependent
type: Class
subclass of: YAMATO_dependent_entity

YAMATO_role
type: Class
comment: Roles are not adequately reflected in YATO, since it is already reflected/imbedded in Hozo tool. While ordinary types such as human, table, etc. are defined independently, roles are defined within a context which they necessarily depends on in our role theory [Mizoguchi 07]. In fact, roles are used in defining all the types in YATO. These are the reasons why YATO does not have to incorporate roles in it. When one uses Hozo with YATO, he/she can enjoy maximally the benefits presented by both. See [Mizoguchi 2007] Mizoguchi R., Sunagawa E., Kozaki K. and Kitamura Y.: A Model of Roles within an Ontology Development Tool: Hozo, J. of Applied Ontology, Vol.2, No.2, pp.159-179. Sep. 2007.
subclass of: YAMATO_specifically_dependent

YAMATO_space
type: Class
comment: Space is indispensable for things to exist in the world.
subclass of: YAMATO_substrate

YAMATO_time
type: Class
comment: The Time is indispensable for entities to exist in the world.
subclass of: YAMATO_substrate

YAMATO_substance
type: Class
comment: This is Identical to YATO's "Substance".
subclass of: YAMATO_substrate
subclass of: Restriction
  cardinality: 1
  on property: has made of
subclass of: Restriction
  on property: has made of
  all values from: chemical_entity

YAMATO_physical
type: Class
comment: It needs both 3D space and time to exist.
subclass of: YAMATO_entity

YAMATO_semi-abstract
type: Class
comment: It needs only time to exist.
subclass of: YAMATO_entity

YAMATO_abstract
type: Class
comment: It needs neither time nor sapce to exist.
subclass of: YAMATO_entity

Unit
type: Class
comment: This is a simplified version and should be elaborated more. The size is one in any case. It is not a kind of dimension but a quantity of the size 1. This is why cm, m, etc. don't need "#" operator.
subclass of: YAMATO_abstract
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: YAMATO_generic_quality

YAMATO_quality_value
type: Class
comment: This is a dependent entity such as long, 10cm, red. Quality value reprents equivalence and difference of quality types belonging a same class, which is an important basic reality for the scientific reseach. This may be regarded as quantity in broad sense. It is just a quantity independent of what quantity it is of. That is, 10cm and 11cm exist just as it is in the quantity space and are just different. On the other hand, when a thing's length is 10cm long at time t1 and 11cm long at t2, we say the length of the thing CHANGED. The 10cm long of a thing has its identity which persists having possibly different values.
subclass of: YAMATO_generically_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: YAMATO_quality_1

YAMATO_generic_quality
type: Class
comment: This is a dependent entity such as the color of this tomato, or the length of tail of a specific mouse individual. Attribute cannot exist alone but always exists dependently on physical things which also need attribute to exist. This class is equivalent with "quality type" of DOLCE.
subclass of: YAMATO_quality_1

YAMATO_property
type: Class
comment: This is an abstration of the possession for things of a quality value. This is necessary to keep the interoperability with state which does NOT compatible with quality type or attribute. Consider "hungry" which is compatible with "being tall" rather than "length".
subclass of: YAMATO_quality_1
subclass of: Restriction
  cardinality: 1
  on property: has refer to
subclass of: Restriction
  on property: has refer to
  all values from: YAMATO_quality_value
subclass of: Restriction
  min cardinality: 1
  on property: has value

YAMATO_quality_1
type: Class
comment: This is a dependent entity such as the color of this tomato, or the length of tail of a specific mouse individual. Quality type cannot exist alone but always exists dependently on physical things which also need quality types to exist.
subclass of: YAMATO_specifically_dependent
subclass of: Restriction
  max cardinality: 2
  on property: has referring to
subclass of: Restriction
  on property: has referring to
  all values from: YAMATO_Any
subclass of: Restriction
  cardinality: 1
  on property: has on what
subclass of: Restriction
  on property: has on what
  all values from: YAMATO_entity

YAMATO_continuant
type: Class
subclass of: YAMATO_physical
subclass of: Restriction
  cardinality: 1
  on property: has material
subclass of: Restriction
  on property: has material
  all values from: YAMATO_substance

YAMATO_occurent
type: Class
subclass of: YAMATO_physical
subclass of: Restriction
  cardinality: 1
  on property: has time
subclass of: Restriction
  on property: has time
  all values from: YAMATO_time_interval
subclass of: Restriction
  on property: has sub occurent
  all values from: YAMATO_occurent
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: YAMATO_entity
subclass of: Restriction
  cardinality: 1
  on property: has environmental factor

YAMATO_1D-space
type: Class
subclass of: YAMATO_space

YAMATO_2D-space
type: Class
subclass of: YAMATO_space

YAMATO_3D-space
type: Class
subclass of: YAMATO_space

YAMATO_stative
type: Class
subclass of: YAMATO_occurent

YAMATO_event
type: Class
subclass of: YAMATO_occurent
subclass of: Restriction
  on property: has subevent
  all values from: YAMATO_event

YAMATO_process
type: Class
subclass of: YAMATO_stative
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: YAMATO_entity

YAMATO_stative_2
type: Class
subclass of: YAMATO_stative

YAMATO_phenomenon
type: Class
subclass of: YAMATO_process

YAMATO_action
type: Class
subclass of: YAMATO_process
subclass of: Restriction
  min cardinality: 1
  on property: has agent
subclass of: Restriction
  on property: has agent
  all values from: YAMATO_agent
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: YAMATO_entity
subclass of: Restriction
  on property: has sub-action
  all values from: YAMATO_action

YAMATO_time_interval
type: Class
subclass of: YAMATO_time
subclass of: Restriction
  cardinality: 1
  on property: has starting time
subclass of: Restriction
  on property: has starting time
  all values from: YAMATO_time_point
subclass of: Restriction
  cardinality: 1
  on property: has ending time
subclass of: Restriction
  on property: has ending time
  all values from: YAMATO_time_point
subclass of: Restriction
  cardinality: 1
  on property: has dulation
subclass of: Restriction
  on property: has dulation
  all values from: YAMATO_time_duration

biological_event
type: Class
subclass of: YAMATO_ordinary_event

Experimental_action
type: Class
subclass of: YAMATO_action

Execution_of_experiment
type: Class
subclass of: Experimental_action
subclass of: Restriction
  cardinality: 1
  on property: has time
subclass of: Restriction
  on property: has time
  all values from: YAMATO_time_interval
subclass of: Restriction
  min cardinality: 1
  on property: has doer
subclass of: Restriction
  on property: has doer
  all values from: YAMATO_agent
subclass of: Restriction
  on property: has experimental procedure
  all values from: Experimental_procedure
subclass of: Restriction
  min cardinality: 1
  on property: has experimental object
subclass of: Restriction
  on property: has experimental object
  all values from: YAMATO_entity
subclass of: Restriction
  on property: has sub-experiment
  all values from: Experimental_action
subclass of: Restriction
  min cardinality: 1
  on property: has experimental data
subclass of: Restriction
  on property: has participant
  all values from: YAMATO_entity
subclass of: Restriction
  cardinality: 1
  on property: has experimental environment

YAMATO_state
type: Class
subclass of: YAMATO_stative_2

YAMATO_object
type: Class
subclass of: YAMATO_continuant

YAMATO_functional
type: Class
subclass of: YAMATO_object

YAMATO_agent
type: Class
subclass of: YAMATO_object
subclass of: Restriction
  on property: has paper as achievement
  all values from: Scientific_paper_as_content

YAMATO_singleton_agent
type: Class
subclass of: YAMATO_agent

YAMATO_complex_agent
type: Class
subclass of: YAMATO_agent

Person
type: Class
subclass of: YAMATO_singleton_agent

Organization
type: Class
subclass of: YAMATO_complex_agent
subclass of: Restriction
  min cardinality: 1
  on property: has member
subclass of: Restriction
  on property: has member
  all values from: Person

YAMATO_time_duration
type: Class
subclass of: YAMATO_time

YAMATO_time_point
type: Class
subclass of: YAMATO_time

YAMATO_content
type: Class
subclass of: YAMATO_semi-abstract

YAMATO_proposition
type: Class
subclass of: YAMATO_content

YAMATO_representation_secondary
type: Class
subclass of: YAMATO_proposition

YAMATO_representation-primary
type: Class
subclass of: YAMATO_proposition
subclass of: Restriction
  min cardinality: 1
  on property: has used for
subclass of: Restriction
  on property: has used for
  all values from: YAMATO_process

Designed_proposition
type: Class
subclass of: YAMATO_representation-primary

Experimental_procedure
type: Class
subclass of: protocol
subclass of: Restriction
  min cardinality: 1
  on property: has purpose
subclass of: Restriction
  on property: has purpose
  all values from: Purpose
subclass of: Restriction
  min cardinality: 1
  on property: has author
subclass of: Restriction
  on property: has author
  all values from: YAMATO_agent
subclass of: Restriction
  min cardinality: 1
  on property: has used for
subclass of: Restriction
  on property: has used for
  all values from: Experimental_action
subclass of: Restriction
  cardinality: 1
  on property: has experimental material
subclass of: Restriction
  on property: has experimental material
  all values from: YAMATO_entity
subclass of: Restriction
  on property: has parameter composition
  all values from: Parameter_composition
subclass of: Restriction
  on property: has documentation
  all values from: Scientific_paper_as_content

Nominal_scale_value
type: Class
comment: This is a fully categorical quality value which do not represent any order or rank.
subclass of: YAMATO_quality_value
subclass of: Restriction
  cardinality: 1
  on property: has depend on
subclass of: Restriction
  on property: has depend on
  all values from: YAMATO_Any

Non-categorical
type: Class
comment: This is a quality value represents order or rank intrinsically.
subclass of: YAMATO_quality_value

Quantity
type: Class
comment: This is a quality value represents order or rank intrinsically exept for unit.
subclass of: Non-categorical

Continuous_quantity
type: Class
comment: This is a quantitavive quality value represents the rank order and intervals between a rank and next rank are equal.
subclass of: Quantity

Ordinal_scale_value
type: Class
comment: This is a non-categorical quality value represents only the rank order (1st, 2nd, 3rd etc.).
subclass of: Quantity

YAMATO_representation
type: Class
comment: Artificial content bearing non-physical thing. This has a content and form as a substance to bear the content. Representation is represented by a agent.
subclass of: YAMATO_semi-abstract

Composite_representation
type: Class
subclass of: Artificial_representation
subclass of: Restriction
  min cardinality: 1
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: YAMATO_representation

Text
type: Class
subclass of: Composite_representation
subclass of: Restriction
  cardinality: 1
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: Sentence

YAMATO_artifact
type: Class
subclass of: YAMATO_functional

Representation_related
type: Class
subclass of: YAMATO_artifact

YAMATO_epresentation_form
type: Class
comment: This is identical to YATO's "representation form".This is what is left after extracting its meaning/content from "representation". The heart of this conceptualization is the separation between form and content.
subclass of: YAMATO_semi-abstract

Developmental_process
type: Class
subclass of: biological_process
subclass of: Restriction
  min cardinality: 1
  on property: has partcipant

Non-represented_thing
type: Class
subclass of: YAMATO_artifact

Purpose
type: Class
subclass of: YAMATO_representation_secondary

YAMATO_non-unitary
type: Class
subclass of: YAMATO_continuant

YAMATO_topological_whole
type: Class
comment: This is Identical to YATO's "Topological whole". Its identity is tightly dependent on the topolocial relations between constituents.
subclass of: YAMATO_non-unitary

Biological_object
type: Class
subclass of: Natural_object
subclass of: Restriction
  min cardinality: 1
  on property: has trait
subclass of: Restriction
  on property: has trait
  all values from: Trait
subclass of: Restriction
  cardinality: 1
  on property: has phenotype

chemical_entity
type: Class
subclass of: Natural_object

Natural_object
type: Class
subclass of: YAMATO_functional

chemical_interaction
type: Class
subclass of: YAMATO_phenomenon
subclass of: Restriction
  min cardinality: 1
  on property: has input entity
subclass of: Restriction
  on property: has input entity
  all values from: YAMATO_entity
subclass of: Restriction
  min cardinality: 1
  on property: has output entity
subclass of: Restriction
  on property: has output entity
  all values from: YAMATO_entity

biological_process
type: Class
subclass of: YAMATO_phenomenon
subclass of: Restriction
  min cardinality: 1
  on property: has quality type
subclass of: Restriction
  on property: has quality type
  all values from: Trait 2
subclass of: Restriction
  min cardinality: 1
  on property: has quality quantity
subclass of: Restriction
  on property: has quality quantity
  all values from: Phenotype 2

organism
type: Class
subclass of: individual_related
subclass of: Restriction
  min cardinality: 1
  on property: has body part
subclass of: Restriction
  on property: has body part
  all values from: Body_part_related
subclass of: Restriction
  cardinality: 1
  on property: has time for born
subclass of: Restriction
  on property: has time for born
  all values from: YAMATO_time_point
subclass of: Restriction
  cardinality: 1
  on property: has time for dead
subclass of: Restriction
  on property: has time for dead
  all values from: YAMATO_time_point
subclass of: Restriction
  max cardinality: 1
  on property: has male parent
subclass of: Restriction
  on property: has male parent
  all values from: organism
subclass of: Restriction
  max cardinality: 1
  on property: has female parent
subclass of: Restriction
  on property: has female parent
  all values from: organism
subclass of: Restriction
  min cardinality: 1
  on property: has gamete
subclass of: Restriction
  on property: has gamete
  all values from: gamete
subclass of: Restriction
  cardinality: 1
  on property: has genome
subclass of: Restriction
  on property: has genome
  all values from: genome of organism

cell
type: Class
subclass of: Body_part_related
subclass of: Restriction
  min cardinality: 1
  on property: has organelle
subclass of: Restriction
  on property: has organelle
  all values from: Organelle
subclass of: Restriction
  cardinality: 1
  on property: has genome
subclass of: Restriction
  on property: has genome
  all values from: multiploid_genome

Anatomical_part
type: Class
subclass of: Body_part_related
subclass of: Restriction
  on property: has sub part
  all values from: Anatomical_part
subclass of: Restriction
  min cardinality: 1
  on property: has cell
subclass of: Restriction
  on property: has cell
  all values from: cell

Experimental_cohort
type: Class
subclass of: YAMATO_group
subclass of: Restriction
  cardinality: 1
  on property: has organism
subclass of: Restriction
  on property: has organism
  all values from: Biological_object
subclass of: Restriction
  on property: has sub class
  all values from: Experimental_cohort
subclass of: Restriction
  min cardinality: 1
  on property: has body part
subclass of: Restriction
  on property: has body part
  all values from: Body_part_related

Molecular_sequence
type: Class
subclass of: YAMATO_hard_symbol_sequence
subclass of: Restriction
  min cardinality: 1
  on property: has symbol
subclass of: Restriction
  on property: has symbol
  all values from: Molecular_symbol
subclass of: Restriction
  cardinality: 1
  on property: has structure
subclass of: Restriction
  on property: has structure
  all values from: _1D_discrete_structure
subclass of: Restriction
  on property: has sub-sequence
  all values from: Molecular_sequence
subclass of: Restriction
  min cardinality: 1
  on property: has radical group
subclass of: Restriction
  on property: has radical group
  all values from: radical_group

_5__to_3__Nucleotide_sequence
type: Class
subclass of: nucleotide_sequence
subclass of: Restriction
  min cardinality: 1
  on property: has symbol
subclass of: Restriction
  on property: has symbol
  all values from: Symbol_designated_by_nucleotide
subclass of: Restriction
  on property: has sub-sequence
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has direction
subclass of: Restriction
  on property: has direction
  all values from: _5__to_3__direction
subclass of: Restriction
  cardinality: 1
  on property: has complementary sequence
subclass of: Restriction
  on property: has complementary sequence
  all values from: Complementary sequence
subclass of: Restriction
  cardinality: 1
  on property: has reverse sequence
subclass of: Restriction
  on property: has reverse sequence
  all values from: reverse_Nucleotide_sequence

Unstructured_sequence
type: Class
subclass of: Sequence_with_pattern

YAMATO_clock_time
type: Class
subclass of: YAMATO_time_point

YAMATO_date
type: Class
subclass of: YAMATO_time_point

YAMATO_intrinsic_generic_quality
type: Class
comment: This attribute is intrinsically essential to entity.
subclass of: YAMATO_generic_quality

YAMATO_accidental_attribute
type: Class
comment: This is a non-essential attribute. There is no clear boundary between intrinsic and accidental attributes in theory.
subclass of: YAMATO_generic_quality

Location
type: Class
subclass of: YAMATO_accidental_attribute

YAMATO_symbol_sequence
type: Class
subclass of: YAMATO_ordinary_form
subclass of: Restriction
  min cardinality: 1
  on property: has symbol
subclass of: Restriction
  on property: has symbol
  all values from: YAMATO_symbol
subclass of: Restriction
  on property: has sub-sequence
  all values from: YAMATO_symbol_sequence

Represented_thing
type: Class
subclass of: Representation_related
subclass of: Restriction
  min cardinality: 1
  on property: has representaion
subclass of: Restriction
  on property: has representaion
  all values from: YAMATO_representation
subclass of: Restriction
  min cardinality: 1
  on property: has media
subclass of: Restriction
  on property: has media
  all values from: YAMATO_physical

Primitive_representation
type: Class
subclass of: Artificial_representation
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_epresentation_form
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: YAMATO_proposition

Representation_by_symbol
type: Class
subclass of: Primitive_representation
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_symbol_sequence
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: YAMATO_proposition

_2D_representation
type: Class
subclass of: Primitive_representation

Sentence
type: Class
subclass of: Representation_by_symbol
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_natural_language

YAMATO_number
type: Class
subclass of: YAMATO_abstract

YAMATO_Structure
type: Class
subclass of: YAMATO_abstract
subclass of: Restriction
  cardinality: 1
  on property: has dimension
subclass of: Restriction
  on property: has dimension
  all values from: YAMATO_space

Basic_action
type: Class
subclass of: YAMATO_action

protocol
type: Class
subclass of: YAMATO_plan-related
subclass of: Restriction
  min cardinality: 1
  on property: has author
subclass of: Restriction
  on property: has author
  all values from: YAMATO_agent
subclass of: Restriction
  on property: has sub procedure
  all values from: protocol
subclass of: Restriction
  cardinality: 1
  on property: has mesured parameter
subclass of: Restriction
  on property: has mesured parameter
  all values from: YAMATO_quality_1

Organelle
type: Class
subclass of: subcellular_component
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Organelle_part

Product_proposition
type: Class
subclass of: YAMATO_representation-primary

Scientific_paper_as_content
type: Class
subclass of: Product_proposition

Emagency_procedure
type: Class
subclass of: protocol

PPML_pipleine_description
type: Class
subclass of: PPML_component

PPML_component
type: Class
subclass of: protocol

PPML_throuput_description
type: Class
subclass of: PPML_component
subclass of: Restriction
  cardinality: 1
  on property: has throuput
subclass of: Restriction
  on property: has throuput
  all values from: Continuous_quantity

Parameter_composition
type: Class
subclass of: protocol
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: Experimental_data

Interval_quantity
type: Class
comment: This is a continuous quantity. However, ratios between them are not meaningful. A highly familiar example of interval scale measurement is temperature with the Celsius scale.
subclass of: Continuous_quantity
subclass of: Restriction
  cardinality: 1
  on property: has upper end
subclass of: Restriction
  on property: has upper end
  all values from: Singleton_quantity
subclass of: Restriction
  cardinality: 1
  on property: has lower end
subclass of: Restriction
  on property: has lower end
  all values from: Singleton_quantity

Singleton_quantity
type: Class
subclass of: Rational_quantity
subclass of: Restriction
  cardinality: 1
  on property: has value
subclass of: Restriction
  on property: has value
  all values from: YAMATO_number
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: Unit

YAMATO_qualitative_generic_quality
type: Class
subclass of: YAMATO_basic_generic_quality

YAMATO_quantitative_generic_quality
type: Class
subclass of: YAMATO_basic_generic_quality
subclass of: Restriction
  cardinality: 1
  on property: has referring to 1
subclass of: Restriction
  on property: has referring to 1
  all values from: Rational_quantity
subclass of: Restriction
  max cardinality: 1
  on property: has referring to 2

Discrete_Structure
type: Class
subclass of: YAMATO_Structure

Form
type: Class
subclass of: YAMATO_Structure

Irregular_structure
type: Class
subclass of: YAMATO_Structure

_1D_discrete_structure
type: Class
subclass of: Discrete_Structure
subclass of: Restriction
  cardinality: 1
  on property: has dimension
subclass of: Restriction
  on property: has dimension
  all values from: YAMATO_1D-space

Stem_and_loop
type: Class
subclass of: Form

Helix
type: Class
subclass of: Form

_3D_irregular_structure
type: Class
subclass of: Irregular_structure
subclass of: Restriction
  cardinality: 1
  on property: has dimension
subclass of: Restriction
  on property: has dimension
  all values from: YAMATO_3D-space

Experimental_data
type: Class
subclass of: YAMATO_representation_secondary
subclass of: Restriction
  min cardinality: 1
  on property: has mesured for
subclass of: Restriction
  on property: has mesured for
  all values from: YAMATO_entity
subclass of: Restriction
  min cardinality: 1
  on property: has content
subclass of: Restriction
  min cardinality: 1
  on property: has mesured parameter
subclass of: Restriction
  on property: has mesured parameter
  all values from: YAMATO_quality_1
subclass of: Restriction
  on property: has outcome paper
  all values from: Scientific_paper_as_content

Direction
type: Class
subclass of: YAMATO_abstract
subclass of: Restriction
  cardinality: 1
  on property: has reverse direction
subclass of: Restriction
  on property: has reverse direction
  all values from: Direction

_5__to_3__direction
type: Class
subclass of: Direction
subclass of: Restriction
  cardinality: 1
  on property: has reverse direction
subclass of: Restriction
  on property: has reverse direction
  all values from: _3__to_5__direction

Natural_representation-like
type: Class
comment: Non-artificial content bearing thing, such as DNA sequence and single DNA as a molecular symbol. As the contrast to representation in artificial, this does'nt have agent as author.
subclass of: YAMATO_representation
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_epresentation_form
subclass of: Restriction
  max cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: YAMATO_proposition

_3__to_5__direction
type: Class
subclass of: Direction
subclass of: Restriction
  cardinality: 1
  on property: has reverse direction
subclass of: Restriction
  on property: has reverse direction
  all values from: _5__to_3__direction

Sequence_only_by_codon
type: Class
subclass of: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has symbol
subclass of: Restriction
  on property: has symbol
  all values from: Symbol_designated_by_nucleotide
subclass of: Restriction
  min cardinality: 1
  on property: has structure symbol
subclass of: Restriction
  on property: has structure symbol
  all values from: codon

Dublet
type: Class
subclass of: Unstructured_sequence

Triplet
type: Class
subclass of: Unstructured_sequence

Open_reading_frame
type: Class
subclass of: Coding_sequence
subclass of: Restriction
  min cardinality: 1
  on property: has structure symbol
subclass of: Restriction
  on property: has structure symbol
  all values from: codon
subclass of: Restriction
  cardinality: 1
  on property: has translated to
subclass of: Restriction
  on property: has translated to
  all values from: Polypeptide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has structure symbol
subclass of: Restriction
  on property: has structure symbol
  all values from: Start_codon
subclass of: Restriction
  cardinality: 1
  on property: has structure symbol
subclass of: Restriction
  on property: has structure symbol
  all values from: Stop_codon

Atom
type: Class
subclass of: chemical_entity

Ion
type: Class
subclass of: chemical_entity

Polyatomic_stable_substance
type: Class
subclass of: chemical_entity

radical_group
type: Class
subclass of: chemical_entity
subclass of: Restriction
  on property: has sub group
  all values from: radical_group

Subatomic_particle
type: Class
subclass of: chemical_entity

Inter_group_comprex
type: Class
subclass of: chemical_entity

Base_pair
type: Class
subclass of: Inter_group_comprex

Molecule
type: Class
subclass of: Polyatomic_stable_substance
subclass of: Restriction
  on property: has part
  all values from: radical_group

Molecular_complex
type: Class
subclass of: Polyatomic_stable_substance
subclass of: Restriction
  min cardinality: 2
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: Molecule

nucleotide_group
type: Class
subclass of: radical_group
subclass of: Restriction
  cardinality: 1
  on property: has monosymbolic sequence
subclass of: Restriction
  on property: has monosymbolic sequence
  all values from: _5__to_3__Nucleotide_sequence

nucleoside_group
type: Class
subclass of: radical_group

Purine_nucleotide
type: Class
subclass of: nucleotide_group

Pyrimidine_nucleotide
type: Class
subclass of: nucleotide_group

Adenin_based_nucleotide
type: Class
subclass of: Purine_nucleotide

Guanine_based_nucleptide
type: Class
subclass of: Purine_nucleotide

Cytosine_based_nucleptide
type: Class
subclass of: Pyrimidine_nucleotide

Thimine_Uracil_based_nucleotide
type: Class
subclass of: Pyrimidine_nucleotide

amino_acid_group
type: Class
subclass of: radical_group

YAMATO_symbol
type: Class
subclass of: Designed_proposition

Alphabet
type: Class
subclass of: YAMATO_symbol

Symbol_designated_by_nucleotide
type: Class
comment: This is a element of genetic information. Natural symbol desiginated by nucleotide residues. This is identical to YAMATO's "AGCT symbol".
subclass of: Molecular_symbol
subclass of: Restriction
  cardinality: 1
  on property: has antisense symbol
subclass of: Restriction
  on property: has antisense symbol
  all values from: Antisense

specification_of_polypeptide
type: Class
subclass of: specification_of_gene_product
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Polypeptide

design_of_functional_RNA
type: Class
subclass of: specification_of_RNA
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Single_strand_RNA_polymer

Polypeptide
type: Class
subclass of: Molecule
subclass of: Restriction
  cardinality: 1
  on property: has sequence
subclass of: Restriction
  on property: has sequence
  all values from: Polypeptide_sequence

Single_strand_RNA_polymer
type: Class
subclass of: polynucleotide
subclass of: Restriction
  min cardinality: 1
  on property: has part

single_strand_DNA_polymer
type: Class
subclass of: polynucleotide
subclass of: Restriction
  min cardinality: 1
  on property: has part

tRNA
type: Class
subclass of: Single_strand_RNA_polymer
subclass of: Restriction
  cardinality: 1
  on property: has anticodon site
subclass of: Restriction
  on property: has anticodon site
  all values from: Anticodon site

Organelle_part
type: Class
subclass of: subcellular_component

Chromosome
type: Class
subclass of: Organelle_part
subclass of: Restriction
  min cardinality: 1
  on property: has chromatid
subclass of: Restriction
  on property: has chromatid
  all values from: Chromatid
subclass of: Restriction
  min cardinality: 1
  on property: has arm
subclass of: Restriction
  on property: has arm
  all values from: Chromosome_arm
subclass of: Restriction
  cardinality: 1
  on property: has polynucleotide
subclass of: Restriction
  on property: has polynucleotide
  all values from: Chromosomal DNA

Metaclass
type: Class
comment: This shows some aggregation of classes which can not be represented by the classification system in Particular world.
subclass of: YAMATO_universal

Taxonomic_rank
type: Class
comment: Taxonomic rank indicates the level of biological classification such as domain, kingdom, phylum, class, order, family genus and species.We cannot represent these ranks as the classes in the "Particular" world.
subclass of: Metaclass

polynucleotide
type: Class
subclass of: Molecule
subclass of: Restriction
  min cardinality: 1
  on property: has part

double_stranded_polynucleotide_group
type: Class
subclass of: polynucleotide_group
subclass of: Restriction
  cardinality: 1
  on property: has sequence
subclass of: Restriction
  on property: has sequence
  all values from: _5__to_3__Nucleotide_sequence

Double_strand_DNA
type: Class
subclass of: polynucleotide
subclass of: Restriction
  cardinality: 1
  on property: has single strand DNA
subclass of: Restriction
  on property: has single strand DNA
  all values from: single_strand_DNA_polymer
subclass of: Restriction
  cardinality: 1
  on property: has single strand DNA
subclass of: Restriction
  on property: has single strand DNA
  all values from: single_strand_DNA_polymer
subclass of: Restriction
  min cardinality: 1
  on property: has part

meta-generic_quality
type: Class
subclass of: YAMATO_quantitative_generic_quality

deviation_from_normal__PATO_0000069
type: Class
subclass of: meta-generic_quality

sequence_mutation_process
type: Class
subclass of: changing_process
subclass of: Restriction
  cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: polynucleotide_group

subcellular_component
type: Class
subclass of: Biological_object
subclass of: Restriction
  cardinality: 1
  on property: has molecular component
subclass of: Restriction
  on property: has molecular component
  all values from: chemical_entity

Organism_body
type: Class
subclass of: Biological_object
subclass of: Restriction
  min cardinality: 1
  on property: has genotype
subclass of: Restriction
  on property: has genotype
  all values from: genotype
subclass of: Restriction
  cardinality: 1
  on property: has genome
subclass of: Restriction
  on property: has genome
  all values from: genome

genotype
type: Class
comment: Genotype is a nominal scale value represents genomic feature of the biological entity focused on specific genetic marker (or possibly locus), It depends on the composition of alleles of the genetic marker. Genotype is a part of genetic background.
subclass of: Genetic_composition_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Zygousis_composition
subclass of: Restriction
  cardinality: 1
  on property: has value
subclass of: Restriction
  on property: has value
  all values from: specification_of_phenotype

Genetic_distance_value
type: Class
subclass of: attribute-specific
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: cM

Base_pair_count_value
type: Class
subclass of: numbers_quantity
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: bp
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: number_of_basepair

Chromatid
type: Class
subclass of: Chromosome_part
subclass of: Restriction
  cardinality: 1
  on property: has molecular component
subclass of: Restriction
  on property: has molecular component
  all values from: polynucleotide

Locus
type: Class
comment: Locus is a nominal scale value for chromosomal location. Usually, it is represented by the name of a genetic marker. Locus itself does not represent ordinal feature of chromosomal location such as genetic or phisical distance.
subclass of: Nominal_scale_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Physical_location_on_chromosome

representation_of_genetic_symbol
type: Class
subclass of: Natural_representation-like

Shape
type: Class
subclass of: Genuine_qualitative_generic_quality

Shape_value
type: Class
comment: Square, triangle, and so on.
subclass of: Nominal_scale_value
subclass of: Restriction
  cardinality: 1
  on property: has value
subclass of: Restriction
  on property: has value
  all values from: Form

Genetic_composition
type: Class
subclass of: Genuine_qualitative_generic_quality
subclass of: Restriction
  cardinality: 1
  on property: has on what
subclass of: Restriction
  on property: has on what
  all values from: Organism_body

Genetic_background
type: Class
comment: Genetic background is a nominal scale value of the gentetic attribute of a biological entity. This is composed of genotypes.
subclass of: genotype
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Genetic_composition
subclass of: Restriction
  min cardinality: 1
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: Genotype_at_a_locus

sequence_mutation_event
type: Class
subclass of: biological_event
subclass of: Restriction
  cardinality: 1
  on property: has starting Event
subclass of: Restriction
  on property: has starting Event
  all values from: mutation start event
subclass of: Restriction
  cardinality: 1
  on property: has constituted by
subclass of: Restriction
  on property: has constituted by
  all values from: sequence_mutation_process
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: mutation ending event

Developmental_event
type: Class
subclass of: biological_event
subclass of: Restriction
  cardinality: 1
  on property: has made of
subclass of: Restriction
  on property: has made of
  all values from: Developmental_process

Representation_of_nucleotide_symbol
type: Class
comment: This is identical to "DNA alphabet" in YATO. This is similar to a "symbol figure" compsed of the 2D image and symbol. A form of this is molecular entity. The content is a symbol.
subclass of: representation_of_genetic_symbol
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: nucleotide_group
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: Symbol_designated_by_nucleotide

individual_related
type: Class
subclass of: Organism_body
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Body_part_related

Body_part_related
type: Class
subclass of: Organism_body

non-meta_generic_quality
type: Class
subclass of: YAMATO_quantitative_generic_quality

length
type: Class
subclass of: non-meta_generic_quality
subclass of: Restriction
  cardinality: 1
  on property: has referring to 1
subclass of: Restriction
  on property: has referring to 1
  all values from: length_quantity

YAMATO_dependent_entity
type: Class
comment: It cannot exist alone but always exists dependently on physical things.
subclass of: YAMATO_particular
subclass of: Restriction
  cardinality: 1
  on property: has on what
subclass of: Restriction
  on property: has on what
  all values from: YAMATO_entity

Rational_quantity
type: Class
comment: Most measurement in the physical sciences and engineering is done on ratio scales. Mass, length, time, plane angle, energy and electric charge are examples of physical measures that are ratio scales. The scale type takes its name from the fact that measurement is the estimation of the ratio between a magnitude of a continuous quantity and a unit magnitude of the same kind (Michell, 1997, 1999). Informally, the distinguishing feature of a ratio scale is the possession of a non-arbitrary zero value. For example, the Kelvin temperature scale has a non-arbitrary zero point of absolute zero, which is denoted 0K and is equal to -273.15 degrees Celsius. This zero point is non arbitrary as the particles which comprise matter at this temperature have zero kinetic energy. (wikipedia: http://en.wikipedia.org/wiki/Level_of_measurement)
subclass of: Continuous_quantity
subclass of: Restriction
  cardinality: 1
  on property: has value
subclass of: Restriction
  on property: has value
  all values from: YAMATO_number
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: Unit

Composite_quantity
type: Class
subclass of: Rational_quantity

Attribute_dependent
type: Class
subclass of: Ordinal_scale_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: YAMATO_quality_1

attribute_independent
type: Class
subclass of: Ordinal_scale_value

Length_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: length

Deviation_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: deviation_from_normal__PATO_0000069

YAMATO_morphological_whole
type: Class
subclass of: YAMATO_object

YAMATO_ordinary_form
type: Class
subclass of: YAMATO_epresentation_form

YAMATO_unit-related_form
type: Class
subclass of: YAMATO_epresentation_form

YAMATO_image_form
type: Class
subclass of: YAMATO_ordinary_form

YAMATO_soft_symbol_sequence
type: Class
subclass of: YAMATO_symbol_sequence

YAMATO_hard_symbol_sequence
type: Class
subclass of: YAMATO_symbol_sequence

YAMATO_language_related
type: Class
subclass of: YAMATO_soft_symbol_sequence

YAMATO_word
type: Class
subclass of: YAMATO_language_related

YAMATO_natural_language
type: Class
subclass of: YAMATO_language_related
subclass of: Restriction
  min cardinality: 1
  on property: has symbol
subclass of: Restriction
  on property: has symbol
  all values from: Alphabet

YAMATO_programing_language
type: Class
subclass of: YAMATO_language_related

YAMATO_plan-related
type: Class
subclass of: Designed_proposition

Artificial_representation
type: Class
subclass of: YAMATO_representation
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_epresentation_form
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: YAMATO_proposition

Picture
type: Class
subclass of: _2D_representation

Symbol_figure
type: Class
subclass of: _2D_representation
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_line_image
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: YAMATO_symbol

alphabet_1
type: Class
subclass of: Symbol_figure
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_line_image
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: Alphabet

YAMATO_I_O_relational
type: Class
subclass of: YAMATO_intrinsic_generic_quality

YAMATO_basic_generic_quality
type: Class
subclass of: YAMATO_intrinsic_generic_quality

Genuine_qualitative_generic_quality
type: Class
subclass of: YAMATO_qualitative_generic_quality

Pseudo-qualitative_generic_quality
type: Class
subclass of: YAMATO_qualitative_generic_quality

Allelism
type: Class
subclass of: Genuine_qualitative_generic_quality

RNA_splicing
type: Class
subclass of: biological_process
subclass of: Restriction
  min cardinality: 1
  on property: has input entity
subclass of: Restriction
  on property: has input entity
  all values from: Premature RNA
subclass of: Restriction
  min cardinality: 1
  on property: has output entity
subclass of: Restriction
  on property: has output entity
  all values from: Splicing product

Alternative_RNA_splicing
type: Class
subclass of: RNA_splicing

Trans-splicing
type: Class
subclass of: RNA_splicing

Autosome
type: Class
subclass of: Monovalent_chromosome

Chromosome_part
type: Class
subclass of: Organelle_part

Chromosome_arm
type: Class
subclass of: Chromosome_part

Biological_replication
type: Class
subclass of: biological_process
subclass of: Restriction
  min cardinality: 1
  on property: has template
subclass of: Restriction
  on property: has template
  all values from: YAMATO_entity
subclass of: Restriction
  min cardinality: 1
  on property: has replica
subclass of: Restriction
  on property: has replica
  all values from: YAMATO_entity

Chromosome_replication
type: Class
subclass of: Biological_replication

replication_of_polynucleotide
type: Class
subclass of: Biological_replication
subclass of: Restriction
  min cardinality: 1
  on property: has template
subclass of: Restriction
  on property: has template
  all values from: polynucleotide group as template
subclass of: Restriction
  min cardinality: 1
  on property: has replica
subclass of: Restriction
  on property: has replica
  all values from: polynucleotide_group

Condensation
type: Class
subclass of: biological_process

Chromosome_condensation
type: Class
subclass of: Condensation

Disjunction
type: Class
subclass of: biological_process

Chromosome_disjunction
type: Class
subclass of: Disjunction

Pairing
type: Class
subclass of: biological_process
subclass of: Restriction
  min cardinality: 1
  on property: has pair
subclass of: Restriction
  on property: has pair
  all values from: YAMATO_entity

Chromosome_pairing
type: Class
subclass of: Pairing
subclass of: Restriction
  min cardinality: 1
  on property: has pair
subclass of: Restriction
  on property: has pair
  all values from: Chromosome

Multivalent_chromosome
type: Class
subclass of: Chromosome
subclass of: Restriction
  min cardinality: 2
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Monovalent_chromosome

Monovalent_chromosome
type: Class
subclass of: Chromosome

Bivalent_chromosome
type: Class
subclass of: Multivalent_chromosome
subclass of: Restriction
  cardinality: 2
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Monovalent_chromosome

Eukaryotic_cell
type: Class
subclass of: cell
subclass of: Restriction
  cardinality: 1
  on property: has organelle
subclass of: Restriction
  on property: has organelle
  all values from: Nucleus

Nucleus
type: Class
subclass of: Organelle
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Chromosome

Mitochondrion
type: Class
subclass of: Organelle

deletion_event
type: Class
subclass of: muation_event_of_unstructured_sequence
subclass of: Restriction
  cardinality: 1
  on property: has starting Event
subclass of: Restriction
  on property: has starting Event
  all values from: YAMATO_instantaneous_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

changing_process
type: Class
subclass of: biological_process

Mutation_of_organism
type: Class
subclass of: changing_process
subclass of: Restriction
  min cardinality: 1
  on property: has output entity
subclass of: Restriction
  on property: has output entity
  all values from: Mutant

Silent_mutation
type: Class
subclass of: Mutation_of_organism

Visible_mutation
type: Class
subclass of: Mutation_of_organism

base_substitution_event
type: Class
subclass of: muation_event_of_unstructured_sequence
subclass of: Restriction
  cardinality: 1
  on property: has starting Event
subclass of: Restriction
  on property: has starting Event
  all values from: YAMATO_instantaneous_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

transition_process
type: Class
subclass of: base_substitution_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

transversion_event
type: Class
subclass of: base_substitution_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

pyrimidine_transition_event
type: Class
subclass of: transition_process
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

purine_transition_event
type: Class
subclass of: transition_process
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

C_to_T_U_transition_event
type: Class
subclass of: pyrimidine_transition_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

T_U_to_C_transition_event
type: Class
subclass of: pyrimidine_transition_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

A_to_G_transition_process
type: Class
subclass of: purine_transition_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

G_to_A_transition_process
type: Class
subclass of: purine_transition_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

Molecular_symbol
type: Class
comment: This is not artificial symbol such as alphabets. This is natural symbol to compose information such as genetic information.
subclass of: YAMATO_symbol

Thimine_based_nucleotide
type: Class
subclass of: Thimine_Uracil_based_nucleotide

Uracil_based_nucleotide
type: Class
subclass of: Thimine_Uracil_based_nucleotide

muation_event_of_unstructured_sequence
type: Class
subclass of: sequence_mutation_event

Chromosomal_rearrangement_process
type: Class
subclass of: changing_process

Context_dependent_phenotypic_change
type: Class
subclass of: Mutation_of_organism

Suppressor_mutation
type: Class
subclass of: Context_dependent_phenotypic_change

Phenotypic_change_dependent_on_genetic_background
type: Class
subclass of: Transformation

Supression
type: Class
subclass of: Phenotypic_change_dependent_on_genetic_background

Loss-of-function
type: Class
subclass of: decrease_of_gene_function

Gain-of-function
type: Class
subclass of: Alteration_of_gene_function

Dominant_negative_effect
type: Class
subclass of: Phenotypic_change_dependent_on_genetic_background

Reversion_of_phenotype
type: Class
subclass of: Phenotypic_change_dependent_on_genetic_background

insersion_event
type: Class
subclass of: muation_event_of_unstructured_sequence
subclass of: Restriction
  cardinality: 1
  on property: has starting Event
subclass of: Restriction
  on property: has starting Event
  all values from: YAMATO_instantaneous_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

Genetic_instability
type: Class
subclass of: Transformation

Alteration_of_gene_function
type: Class
subclass of: Transformation

decrease_of_gene_function
type: Class
subclass of: Alteration_of_gene_function

Partial_loss_of_gene_function
type: Class
subclass of: decrease_of_gene_function

Acceleration_of_function
type: Class
subclass of: Alteration_of_gene_function

Polymorphism
type: Class
subclass of: meta-generic_quality

Polymorphism_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Polymorphism

Genetic_polymorphism
type: Class
subclass of: Polymorphism

Chromosomal_polumorphism
type: Class
subclass of: Genetic_polymorphism

Inversion_polymorphism
type: Class
subclass of: Chromosomal_polumorphism

Restriction_fragment_length_polymorphism
type: Class
subclass of: Genetic_polymorphism

Single_nucleotide_polymorphism
type: Class
subclass of: Genetic_polymorphism

Transient_polymorphism
type: Class
subclass of: Genetic_polymorphism

Amplified_fragment_length_polymorphism
type: Class
subclass of: Genetic_polymorphism

Balanced_polymorphism
type: Class
subclass of: Genetic_polymorphism

Frequency_quantity
type: Class
subclass of: attribute-specific
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: YAMATO_quality_1

Allelic_frequency
type: Class
subclass of: Frequency_quantity

Poly-allelism
type: Class
subclass of: meta-generic_quality

Poly-allelism_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Poly-allelism

Complementation
type: Class
subclass of: Phenotypic_change_dependent_on_genetic_background

Allelic_complementation
type: Class
subclass of: Complementation

Intracistronic_complementation
type: Class
subclass of: Complementation

Negative_complementation
type: Class
subclass of: Complementation

Nonsense_codon
type: Class
subclass of: codon

Tripret_repeat
type: Class
subclass of: Repetitive_sequence
subclass of: Restriction
  on property: has repeat unit
  all values from: Triplet

dinucleotide_repeat
type: Class
subclass of: Doublet_repeat

Inverted_repeat_sequence
type: Class
subclass of: Structured_seqence

Repetitive_sequence
type: Class
subclass of: repeat_sequence

Consensus_sequence
type: Class
subclass of: Recognition_sequence

Direct_repeat_sequence
type: Class
subclass of: Repetitive_sequence

Recognition_sequence
type: Class
subclass of: Functional_sequence

Canonical_sequence
type: Class
subclass of: Functional_sequence

Leader_sequence
type: Class
subclass of: Functional_sequence

Intervening_sequence
type: Class
subclass of: Functional_sequence

Alu_sequence
type: Class
subclass of: Unstructured_sequence

Transformation
type: Class
subclass of: Mutation_of_organism

Homeotic_transformation
type: Class
subclass of: Transformation

Functional_sequence
type: Class
subclass of: Unstructured_sequence

TATA_box
type: Class
subclass of: Functional_sequence

Single-strand_conformation_polymorphism
type: Class
subclass of: Genetic_polymorphism

Conservation
type: Class
subclass of: biological_process

Conservation_of_sequence
type: Class
subclass of: Conservation
subclass of: Restriction
  min cardinality: 1
  on property: has input entity
subclass of: Restriction
  on property: has input entity
  all values from: Molecular_sequence
subclass of: Restriction
  min cardinality: 1
  on property: has output entity
subclass of: Restriction
  on property: has output entity
  all values from: Conserved sequence

Diversity
type: Class
subclass of: non-meta_generic_quality

in_xxxx_quality_for_experiment
type: Class
subclass of: Genuine_qualitative_generic_quality

Mode_of_inheritance_value
type: Class
subclass of: Nominal_scale_value

Dominance
type: Class
subclass of: Dominace_related

Mode_of_inheritance
type: Class
subclass of: Genuine_qualitative_generic_quality

Dominance_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Dominance

Partial_dominance
type: Class
subclass of: Dominance_value

Overdominance
type: Class
subclass of: Dominance_value

Underdominance
type: Class
subclass of: Dominance_value

incomplete_dominance
type: Class
subclass of: Dominance_value

Co-dominance
type: Class
subclass of: Dominace_related

Cis-dominance
type: Class
subclass of: Dominace_related

Dominace_related
type: Class
subclass of: meta-generic_quality

Pseudodominance
type: Class
subclass of: Dominace_related

Qualitative_property
type: Class
subclass of: YAMATO_property

Quantitative_property
type: Class
subclass of: YAMATO_property

Intrinsically_qualitative
type: Class
subclass of: Qualitative_property

Extrinsically_qualitative
type: Class
subclass of: Qualitative_property

Attribute_inclusive
type: Class
subclass of: Extrinsically_qualitative

Attribute_neutral
type: Class
subclass of: Extrinsically_qualitative

Meta_property
type: Class
subclass of: Attribute_neutral

Non-meta_property
type: Class
subclass of: Attribute_neutral

Heterozygousity
type: Class
subclass of: Attribute_inclusive

Hemizygosity
type: Class
subclass of: Attribute_inclusive

Multigenisity
type: Class
subclass of: non-meta_generic_quality

Multigenisity_value
type: Class
subclass of: Attribute_dependent
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Multigenisity

Monogenic
type: Class
subclass of: Multigenisity_value

Multigenic
type: Class
subclass of: Multigenisity_value

Haplotype_generic_quality
type: Class
subclass of: Genuine_qualitative_generic_quality

Haplotype
type: Class
subclass of: Genetic_composition_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Combination_of_alleles_at_different_loci

Proximo-distal_value
type: Class
subclass of: attribute_independent

Complex_locus
type: Class
subclass of: discrete_locus

discrete_locus
type: Class
subclass of: Locus

Quantitative_trait_locus
type: Class
subclass of: Locus

Simple_locus
type: Class
subclass of: discrete_locus

Symbol_of_aminoacid
type: Class
subclass of: Molecular_symbol

Transcription
type: Class
subclass of: biological_process
subclass of: Restriction
  cardinality: 1
  on property: has sub occurent
subclass of: Restriction
  on property: has sub occurent
  all values from: transcriptional initiation
subclass of: Restriction
  min cardinality: 1
  on property: has sub occurent
subclass of: Restriction
  on property: has sub occurent
  all values from: transcriptional elongation
subclass of: Restriction
  cardinality: 1
  on property: has sub occurent
subclass of: Restriction
  on property: has sub occurent
  all values from: transcriptional termination
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: template
subclass of: Restriction
  min cardinality: 1
  on property: has transcript
subclass of: Restriction
  on property: has transcript
  all values from: Transcript

Translation
type: Class
subclass of: biological_process
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: tRNA
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: template for translation
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: gene product

transcription_plus_splicing
type: Class
subclass of: biological_process

molecular_form
type: Class
subclass of: YAMATO_epresentation_form

multiploid_genome
type: Class
subclass of: genome
subclass of: Restriction
  min cardinality: 1
  on property: has haploid
subclass of: Restriction
  on property: has haploid
  all values from: Haploid_genome

Haploid_genome
type: Class
subclass of: genome
subclass of: Restriction
  min cardinality: 1
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: allele

Sequence_with_pattern
type: Class
subclass of: Molecular_sequence

Structured_seqence
type: Class
subclass of: Sequence_with_pattern
subclass of: Restriction
  min cardinality: 1
  on property: has structure symbol
subclass of: Restriction
  on property: has structure symbol
  all values from: Unstructured_sequence

repeat_sequence
type: Class
subclass of: Structured_seqence
subclass of: Restriction
  on property: has repeat unit
  all values from: Molecular_sequence

Doublet_repeat
type: Class
subclass of: Repetitive_sequence
subclass of: Restriction
  on property: has repeat unit
  all values from: Dublet

Tripret_nucleotide_repeat
type: Class
subclass of: Tripret_repeat

Mus_musculus
type: Class
subclass of: mammal
subclass of: Restriction
  cardinality: 1
  on property: has genome
subclass of: Restriction
  on property: has genome
  all values from: genome

Mouse_Gdf5_design
type: Class
subclass of: specification_of_polypeptide
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Mouse_GDF5_protein

Coding_sequence
type: Class
subclass of: Sequence_only_by_codon

Mouse_GDF5_protein
type: Class
subclass of: Polypeptide

specification_of_gene_product
type: Class
subclass of: specification_of_biomolecule
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Molecule

Mouse_Strain
type: Class
subclass of: Mus_musculus

C57BL_6
type: Class
subclass of: Mouse_Strain

YAMATO_group_like_thing
type: Class
subclass of: YAMATO_non-unitary

YAMATO_group
type: Class
subclass of: YAMATO_group_like_thing
subclass of: Restriction
  min cardinality: 1
  on property: has member
subclass of: Restriction
  on property: has member
  all values from: YAMATO_Any
subclass of: Restriction
  on property: has sub group
  all values from: YAMATO_group

Coding_of_polypeptide
type: Class
subclass of: Coding_of_gene_product
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: specification_of_polypeptide

Coding_of_functional_RNA
type: Class
subclass of: Coding_of_transcript

Coding_of_transcript
type: Class
subclass of: Coding_of_gene_product
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: design_of_functional_RNA

Coding_of_Gdf5
type: Class
subclass of: Coding_of_mammal_Gdf5
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: Mouse_Gdf5_design

specification_of_RNA
type: Class
subclass of: specification_of_gene_product
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Single_strand_RNA_polymer

Alphabet_figure_for_nucleotide_symbol
type: Class
subclass of: Symbol_figure
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_line_image
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: Symbol_designated_by_nucleotide

YAMATO_still_image
type: Class
subclass of: YAMATO_image_form

YAMATO_line_image
type: Class
subclass of: YAMATO_still_image

Electronic_file_with_natural_language_representation
type: Class
subclass of: electronic_version
subclass of: Restriction
  min cardinality: 1
  on property: has representaion
subclass of: Restriction
  on property: has representaion
  all values from: Text
subclass of: Restriction
  min cardinality: 1
  on property: has media
subclass of: Restriction
  on property: has media
  all values from: Electronic_file

Paper
type: Class
subclass of: Non-represented_thing

Electronic_file
type: Class
subclass of: Non-represented_thing

Electronic_file_with_genetic_information
type: Class
subclass of: electronic_version
subclass of: Restriction
  min cardinality: 1
  on property: has representaion
subclass of: Restriction
  on property: has representaion
  all values from: Coding_of_polypeptide
subclass of: Restriction
  min cardinality: 1
  on property: has media
subclass of: Restriction
  on property: has media
  all values from: Electronic_file

symbol_sequence_stuff
type: Class
subclass of: Represented_thing

document
type: Class
subclass of: symbol_sequence_stuff
subclass of: Restriction
  min cardinality: 1
  on property: has representaion
subclass of: Restriction
  on property: has representaion
  all values from: abstract_document
subclass of: Restriction
  min cardinality: 1
  on property: has media
subclass of: Restriction
  on property: has media
  all values from: YAMATO_physical

electronic_version
type: Class
subclass of: symbol_sequence_stuff

document_of_genetic_information
type: Class
subclass of: symbol_sequence_stuff
subclass of: Restriction
  min cardinality: 1
  on property: has representaion
subclass of: Restriction
  on property: has representaion
  all values from: YAMATO_representation
subclass of: Restriction
  min cardinality: 1
  on property: has media
subclass of: Restriction
  on property: has media
  all values from: YAMATO_physical

abstract_document
type: Class
subclass of: Composite_representation
subclass of: Restriction
  min cardinality: 1
  on property: has component
subclass of: Restriction
  on property: has component
  all values from: Text
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: YAMATO_natural_language

Nucleotide_triplet
type: Class
subclass of: Triplet
subclass of: Restriction
  cardinality: 1
  on property: has complementary sequence
subclass of: Restriction
  on property: has complementary sequence
  all values from: Nucleotide_triplet

initiation_tRNA
type: Class
subclass of: tRNA
subclass of: Restriction
  cardinality: 1
  on property: has anticodon site
subclass of: Restriction
  on property: has anticodon site
  all values from: double_stranded_polynucleotide_group

termination_tRNA
type: Class
subclass of: tRNA
subclass of: Restriction
  cardinality: 1
  on property: has anticodon site
subclass of: Restriction
  on property: has anticodon site
  all values from: double_stranded_polynucleotide_group

codon
type: Class
subclass of: Nucleotide_triplet
subclass of: Restriction
  cardinality: 1
  on property: has complementary sequence
subclass of: Restriction
  on property: has complementary sequence
  all values from: anticodon

Stop_codon
type: Class
subclass of: Nonsense_codon

Sense_codon
type: Class
subclass of: codon

Start_codon
type: Class
subclass of: Sense_codon

virtual_locaiton
type: Class
subclass of: YAMATO_accidental_attribute

Virtural_physical_distance_system
type: Class
subclass of: virtual_locaiton
subclass of: Restriction
  cardinality: 1
  on property: has what for
subclass of: Restriction
  on property: has what for
  all values from: Physical_location_on_chromosome

Phisical_distance_in_genome_assembly
type: Class
subclass of: Base_pair_count_value
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: bp
subclass of: Restriction
  cardinality: 1
  on property: has value of

Set_of_molecule
type: Class
subclass of: chemical_entity
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: Polyatomic_stable_substance
subclass of: Restriction
  on property: has subset
  all values from: Set_of_molecule

set_of_polynucleotide_molecules
type: Class
subclass of: Set_of_molecule
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: polynucleotide

interval_quantity
type: Class
subclass of: Composite_quantity
subclass of: Restriction
  cardinality: 1
  on property: has lower end
subclass of: Restriction
  on property: has lower end
  all values from: Singleton_quantity
subclass of: Restriction
  cardinality: 1
  on property: has upper end
subclass of: Restriction
  on property: has upper end
  all values from: Singleton_quantity

Basepair_interval
type: Class
subclass of: interval_quantity
subclass of: Restriction
  cardinality: 1
  on property: has lower end
subclass of: Restriction
  on property: has lower end
  all values from: Base_pair_count_value
subclass of: Restriction
  cardinality: 1
  on property: has upper end
subclass of: Restriction
  on property: has upper end
  all values from: Base_pair_count_value

Physical_distance
type: Class
subclass of: Base_pair_count_value
subclass of: Restriction
  cardinality: 1
  on property: has unit
subclass of: Restriction
  on property: has unit
  all values from: bp
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Physical_location_on_chromosome

number_of_basepair
type: Class
subclass of: number_of_objects
subclass of: Restriction
  cardinality: 1
  on property: has referring to 1
subclass of: Restriction
  on property: has referring to 1
  all values from: Base_pair_count_value
subclass of: Restriction
  cardinality: 1
  on property: has of what
subclass of: Restriction
  on property: has of what
  all values from: nucleotide_group

length_quantity
type: Class
subclass of: ordinaly_quantity
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: length

color_c
type: Class
subclass of: Nominal_scale_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: color

color
type: Class
subclass of: non-meta_generic_quality

Wave_length_interval
type: Class
subclass of: interval_quantity
subclass of: Restriction
  cardinality: 1
  on property: has lower end
subclass of: Restriction
  on property: has lower end
  all values from: Wave_length_quantity
subclass of: Restriction
  cardinality: 1
  on property: has upper end
subclass of: Restriction
  on property: has upper end
  all values from: Wave_length_quantity

Wave_length_quantity
type: Class
subclass of: length_quantity

Physical_location_on_chromosome
type: Class
subclass of: number_of_basepair
subclass of: Restriction
  cardinality: 1
  on property: has referring to 1
subclass of: Restriction
  on property: has referring to 1
  all values from: Chromosomal_interval
subclass of: Restriction
  cardinality: 1
  on property: has depend on
subclass of: Restriction
  on property: has depend on
  all values from: Chromosome
subclass of: Restriction
  cardinality: 1
  on property: has of what
subclass of: Restriction
  on property: has of what
  all values from: nucleotide_group

Chromosomal_location_value
type: Class
subclass of: Composite_quantity
subclass of: Restriction
  cardinality: 1
  on property: has chromosome ID
subclass of: Restriction
  cardinality: 1
  on property: has chromosomal location
subclass of: Restriction
  on property: has chromosomal location
  all values from: Base_pair_count_value

Chromosomal_interval
type: Class
subclass of: Composite_quantity
subclass of: Restriction
  cardinality: 1
  on property: has chromosome ID
subclass of: Restriction
  cardinality: 1
  on property: has chromosomal interval
subclass of: Restriction
  on property: has chromosomal interval
  all values from: Basepair_interval
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Physical_location_on_chromosome

Genotype_at_a_locus
type: Class
subclass of: genotype
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Genetic_composition
subclass of: Restriction
  min cardinality: 1
  on property: has depend on
subclass of: Restriction
  on property: has depend on
  all values from: allele
subclass of: Restriction
  cardinality: 1
  on property: has locus
subclass of: Restriction
  on property: has locus
  all values from: Locus

attribute-specific
type: Class
subclass of: Singleton_quantity

counting_generic_quality
type: Class
subclass of: meta-generic_quality
subclass of: Restriction
  cardinality: 1
  on property: has on what
subclass of: Restriction
  on property: has on what
  all values from: YAMATO_entity

number_of_objects
type: Class
subclass of: counting_generic_quality
subclass of: Restriction
  cardinality: 1
  on property: has referring to 1
subclass of: Restriction
  on property: has referring to 1
  all values from: numbers_quantity
subclass of: Restriction
  cardinality: 1
  on property: has referring to 2
subclass of: Restriction
  on property: has referring to 2
  all values from: numbers_quality_value
subclass of: Restriction
  cardinality: 1
  on property: has of what
subclass of: Restriction
  on property: has of what
  all values from: YAMATO_object

ordinaly_quantity
type: Class
subclass of: attribute-specific

quantity_per_time
type: Class
subclass of: attribute-specific

numbers_quantity
type: Class
subclass of: ordinaly_quantity

meta_attribute_value
type: Class
subclass of: attribute_independent

counting_value
type: Class
subclass of: meta_attribute_value

deviation_2
type: Class
subclass of: meta_attribute_value

numbers_quality_value
type: Class
subclass of: counting_value

Composition_of_chromosome
type: Class
subclass of: Genetic_composition

Zygousis_composition
type: Class
subclass of: Genetic_composition

Combination_of_alleles_at_different_loci
type: Class
subclass of: Genetic_composition

Karyotype
type: Class
subclass of: Genetic_composition_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Composition_of_chromosome

Genetic_composition_value
type: Class
subclass of: Nominal_scale_value
subclass of: Restriction
  cardinality: 1
  on property: has value of
subclass of: Restriction
  on property: has value of
  all values from: Genetic_composition

RNA_group
type: Class
subclass of: single_stranded_polynucleotide_group
subclass of: Restriction
  on property: has sub group
  all values from: RNA_group

DNA_group
type: Class
subclass of: double_stranded_polynucleotide_group

set_of_DNA
type: Class
subclass of: set_of_polynucleotide_molecules

set_of_RNA
type: Class
subclass of: set_of_polynucleotide_molecules
subclass of: Restriction
  min cardinality: 1
  on property: has part
subclass of: Restriction
  on property: has part
  all values from: polynucleotide

Production_of_polypeptide_in_eukaryote
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has first process
  all values from: Transcription
subclass of: Restriction
  on property: has second process
  all values from: RNA_splicing
subclass of: Restriction
  on property: has third process
  all values from: Translation

Production_of_mouse_GDF5
type: Class
subclass of: Production_of_polypeptide_in_eukaryote
subclass of: Restriction
  on property: has first process
  all values from: Transcription
subclass of: Restriction
  on property: has second process
  all values from: RNA_splicing
subclass of: Restriction
  on property: has third process
  all values from: Translation

Coding_of_gene_product
type: Class
subclass of: Genetic_information_entity
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  cardinality: 1
  on property: has content
subclass of: Restriction
  on property: has content
  all values from: specification_of_gene_product

purine_to_pyrimidine_transversion_event
type: Class
subclass of: transversion_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

pyrimidine_to_purine_transversion_event
type: Class
subclass of: transversion_event
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: YAMATO_instantaneous_event

YAMATO_specification_plan
type: Class
subclass of: Designed_proposition
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: YAMATO_Any

Specification_of_polynucleotide
type: Class
subclass of: specification_of_biomolecule
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: polynucleotide_group
subclass of: Restriction
  on property: has realizing representation
  all values from: Genetic_information_entity

Homo_sapiens
type: Class
subclass of: mammal

biological_polulation
type: Class
subclass of: YAMATO_group
subclass of: Restriction
  on property: has sub population
  all values from: biological_polulation

Mendelian_population
type: Class
subclass of: biological_polulation
subclass of: Restriction
  min cardinality: 1
  on property: has member
subclass of: Restriction
  on property: has member
  all values from: organism
subclass of: Restriction
  on property: has sub population
  all values from: Mendelian_population
subclass of: Restriction
  cardinality: 1
  on property: has species
subclass of: Restriction
  on property: has species
  all values from: biological species
subclass of: Restriction
  min cardinality: 1
  on property: has gene pool
subclass of: Restriction
  on property: has gene pool
  all values from: gene_pool

mammal
type: Class
subclass of: animal
subclass of: Restriction
  cardinality: 1
  on property: has genome
subclass of: Restriction
  on property: has genome
  all values from: genome

Coding_of_mammal_Gdf5
type: Class
subclass of: Coding_of_Gdf5_type_protein

Coding_of_Gdf5_type_protein
type: Class
subclass of: Coding_of_polypeptide

Sequence_of_Gdf5
type: Class
subclass of: _5__to_3__Nucleotide_sequence

reproduction
type: Class
subclass of: reproduction-related
subclass of: Restriction
  min cardinality: 1
  on property: has parent
subclass of: Restriction
  on property: has parent
  all values from: parent
subclass of: Restriction
  min cardinality: 1
  on property: has offspring
subclass of: Restriction
  on property: has offspring
  all values from: offspring

reproduction-related
type: Class
subclass of: biological_process

zygosis
type: Class
subclass of: reproduction-related
subclass of: Restriction
  min cardinality: 1
  on property: has parent
subclass of: Restriction
  on property: has parent
  all values from: organism
subclass of: Restriction
  cardinality: 2
  on property: has gamete
subclass of: Restriction
  on property: has gamete
  all values from: gamete
subclass of: Restriction
  cardinality: 1
  on property: has zygote
subclass of: Restriction
  on property: has zygote
  all values from: organism

gamete_lineage
type: Class
subclass of: Developmental_process
subclass of: Restriction
  on property: has mutation
  all values from: sequence_mutation_process
subclass of: Restriction
  min cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: gamete

death
type: Class
subclass of: biological_process

gamete
type: Class
subclass of: cell

diploid_genome
type: Class
subclass of: multiploid_genome

cell_division
type: Class
subclass of: biological_process

animal
type: Class
subclass of: organism

population_of_a_species
type: Class
subclass of: Mendelian_population
subclass of: Restriction
  min cardinality: 1
  on property: has member
subclass of: Restriction
  on property: has member
  all values from: organism
subclass of: Restriction
  cardinality: 1
  on property: has species specific specification of genomic segment
subclass of: Restriction
  on property: has species specific specification of genomic segment
  all values from: spec s-segment
subclass of: Restriction
  cardinality: 1
  on property: has species specific specification of genomic segment
subclass of: Restriction
  on property: has species specific specification of genomic segment
  all values from: spec gene
subclass of: Restriction
  on property: has sub population
  all values from: partial_population_in_species
subclass of: Restriction
  cardinality: 1
  on property: has species
subclass of: Restriction
  on property: has species
  all values from: organism
subclass of: Restriction
  min cardinality: 1
  on property: has gene pool
subclass of: Restriction
  on property: has gene pool
  all values from: gene pool of species

Genetic_information_entity
type: Class
subclass of: Natural_representation-like
subclass of: Restriction
  cardinality: 1
  on property: has form
subclass of: Restriction
  on property: has form
  all values from: _5__to_3__Nucleotide_sequence
subclass of: Restriction
  on property: has content
  all values from: specification_of_gene_product

specification_of_biomolecule
type: Class
subclass of: YAMATO_specification_plan

physical_phenomenon
type: Class
subclass of: YAMATO_phenomenon

genome
type: Class
comment: In this ontology "genome" is not the entirety of an organism's hereditary information, but the entirety of a bearer of an organism's hereditary information.
subclass of: Organelle_part
subclass of: Restriction
  cardinality: 1
  on property: has genomic polynucleotide
subclass of: Restriction
  on property: has genomic polynucleotide
  all values from: genomic polynucleotide

single_stranded_polynucleotide_group
type: Class
subclass of: polynucleotide_group

polynucleotide_group
type: Class
subclass of: radical_group
subclass of: Restriction
  on property: has sub group
  all values from: radical_group
subclass of: Restriction
  on property: has sub fragment
  all values from: polynucleotide_group
subclass of: Restriction
  cardinality: 1
  on property: has representation media
subclass of: Restriction
  on property: has representation media
  all values from: polynucleotide
subclass of: Restriction
  min cardinality: 1
  on property: has realizing representation
subclass of: Restriction
  on property: has realizing representation
  all values from: Genetic_information_entity

YAMATO_ordinary_event
type: Class
subclass of: YAMATO_event
subclass of: Restriction
  cardinality: 1
  on property: has starting Event
subclass of: Restriction
  on property: has starting Event
  all values from: starting event
subclass of: Restriction
  cardinality: 1
  on property: has constituted by
subclass of: Restriction
  on property: has constituted by
  all values from: YAMATO_process
subclass of: Restriction
  cardinality: 1
  on property: has terminal Event
subclass of: Restriction
  on property: has terminal Event
  all values from: ending event

Change_of_mendelian_population
type: Class
subclass of: changing_process
subclass of: Restriction
  cardinality: 1
  on property: has participant
subclass of: Restriction
  on property: has participant
  all values from: Mendelian_population
subclass of: Restriction
  min cardinality: 1
  on property: has mutation event
subclass of: Restriction
  on property: has mutation event
  all values from: mutation event of s-segment
subclass of: Restriction
  on property: has mutation event of gene
  all values from: mutation event of gene
subclass of: Restriction
  min cardinality: 1
  on property: has sexual reproduction

nucleotide_sequence
type: Class
subclass of: Molecular_sequence

gene_pool
type: Class
subclass of: YAMATO_group
subclass of: Restriction
  cardinality: 1
  on property: has what for
subclass of: Restriction
  on property: has what for
  all values from: spec s-segment
subclass of: Restriction
  cardinality: 1
  on property: has species
subclass of: Restriction
  on property: has species
  all values from: organism
subclass of: Restriction
  min cardinality: 1
  on property: has variant
subclass of: Restriction
  on property: has variant
  all values from: variant of s-egment

style_of_text
type: Class
subclass of: Designed_proposition

YAMATO_generically_dependent
type: Class
subclass of: YAMATO_dependent_entity

YAMATO_instant_event
type: Class
subclass of: YAMATO_event

YAMATO_instantaneous_event
type: Class
subclass of: YAMATO_instant_event

Polypeptide_sequence
type: Class
subclass of: Molecular_sequence

Process_of_central_dogma
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has sub occurent
  all values from: Transcription
subclass of: Restriction
  on property: has sub occurent
  all values from: Translation

partial_population_in_species
type: Class
subclass of: Mendelian_population

specification_of_phenotype
type: Class
subclass of: YAMATO_specification_plan
subclass of: Restriction
  min cardinality: 1
  on property: has for what
subclass of: Restriction
  on property: has for what
  all values from: Phenotype

reverse_Nucleotide_sequence
type: Class
subclass of: nucleotide_sequence